FREEDA

FREEDA (Finder of Rapidly Evolving Exons in Diverse Assemblies) is a Python built end-to-end automated pipeline to detect positive selection, created for experimental cell biologists without training in computational biology and molecular evolution.

Contents:

• Overview
• How to get started
  • MacOS
  • Linux
  • Windows
• Usage
  • Using FREEDA GUI
  • Understanding Events Window
  • Understanding Results
• Genomic assemblies used
• Troubleshooting
  • Fatal errors (action needed)
  • Warnings (no action needed)
  • Problems with VirtualBox
  • Other problems
• Development
  • Pyinstaller
  • Documentation